Metagenomic analysis reveals the different characteristics of microbial communities inside and outside the karst tiankeng

Characteristics of the Soil Microbial Communities in Different Slope Positions along an Inverted Stone Slope in a Degraded Karst Tiankeng

(2021) Cong Jiang et al.   Biology-Basel

Metagenomic insights into seasonal variations in the soil microbial community and function in a Larix gmelinii forest of Mohe, China

(2020) Tong Bao et al.   JOURNAL OF FORESTRY RESEARCH

Towards a multidimensional view of biodiversity and ecosystem functioning in a changing world

(2020) Anna Edlinger et al.   NEW PHYTOLOGIST

Metagenomic analysis of microbial community and function reveals the response of soil respiration to the conversion of cropland to plantations in the Loess Plateau of China

(2020) Lei Zhang et al.   Global Ecology and Conservation

Soil functions and ecosystem services research in the Chinese karst Critical Zone

(2019) Sophie M. Green et al.   CHEMICAL GEOLOGY

Profiling the Bacterial Diversity in a Typical Karst Tiankeng of China

(2019) Gaozhong Pu et al.   Biomolecules

Changes in microbial functional genes within the soil metagenome during forest ecosystem restoration

(2019) Shan Sun et al.   SOIL BIOLOGY & BIOCHEMISTRY

Karst landscapes of China: patterns, ecosystem processes and services

(2019) Kelin Wang et al.   LANDSCAPE ECOLOGY

Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments

(2018) Stephanie A. Eichorst et al.   ENVIRONMENTAL MICROBIOLOGY

Differential responses of soil microbial biomass, diversity, and compositions to altitudinal gradients depend on plant and soil characteristics

(2018) Chengjie Ren et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Decreased occurrence of carbon cycle functions in microbial communities along with long-term secondary succession

(2018) Yangquanwei Zhong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Contrasting Soil Bacterial Community, Diversity, and Function in Two Forests in China

(2018) Hua Wei et al.   Frontiers in Microbiology

Changes in the soil microbial communities of alpine steppe at Qinghai-Tibetan Plateau under different degradation levels

(2018) Heng Zhou et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Karst tiankengs as refugia for indigenous tree flora amidst a degraded landscape in southwestern China

(2017) Yuqiao Su et al.   Scientific Reports

Spatial scale drives patterns in soil bacterial diversity

(2016) Sarah L. O'Brien et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial regulation of the soil carbon cycle: evidence from gene–enzyme relationships

(2016) Pankaj Trivedi et al.   ISME Journal

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Identification of the Core Set of Carbon-Associated Genes in a Bioenergy Grassland Soil

(2016) Adina Howe et al.   PLoS One

The Relationship between pH and Bacterial Communities in a Single Karst Ecosystem and Its Implication for Soil Acidification

(2016) Yuan Yun et al.   Frontiers in Microbiology

Soil microbial communities are shaped by plant-driven changes in resource availability during secondary succession

(2015) Lauren C. Cline et al.   ECOLOGY

Forest harvesting reduces the soil metagenomic potential for biomass decomposition

(2015) Erick Cardenas et al.   ISME Journal

Vertical Distribution of Soil Denitrifying Communities in a Wet Sclerophyll Forest under Long-Term Repeated Burning

(2015) Xian Liu et al.   MICROBIAL ECOLOGY

Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites

(2015) Bruce C. Thomson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre

(2015) Kristina M. Fontanez et al.   Frontiers in Microbiology

Exploring connections among nature, biodiversity, ecosystem services, and human health and well-being: Opportunities to enhance health and biodiversity conservation

(2015) Paul A. Sandifer et al.   Ecosystem Services

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Marine biodiversity and ecosystem functioning: what's known and what's next?

(2014) Lars Gamfeldt et al.   OIKOS

Temporal variability in soil microbial communities across land-use types

(2013) Christian L Lauber et al.   ISME Journal

Analysis of human induced changes in a karst landscape — the filling of dolines in the Kras plateau, Slovenia

(2013) Gregor Kovačič et al.   SCIENCE OF THE TOTAL ENVIRONMENT

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Soil Microbial Community Successional Patterns during Forest Ecosystem Restoration

(2011) Natasha C. Banning et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Persistence of soil organic matter as an ecosystem property

(2011) Michael W. I. Schmidt et al.   NATURE

Land-use history has a stronger impact on soil microbial community composition than aboveground vegetation and soil properties

(2011) Kamlesh Jangid et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of phosphorus addition on soil microbial biomass and community composition in three forest types in tropical China

(2011) Lei Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada

(2011) Beth F.T. Brockett et al.   SOIL BIOLOGY & BIOCHEMISTRY

How understanding aboveground–belowground linkages can assist restoration ecology

(2010) Paul Kardol et al.   TRENDS IN ECOLOGY & EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Abundance, composition, diversity and novelty of soil Proteobacteria

(2009) Anne M Spain et al.   ISME Journal

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE

Soil Microbial Communities and Restoration Ecology: Facilitators or Followers?

(2009) J. Harris   SCIENCE

A test of the growth-limitation theory for alpine tree line formation in evergreen and deciduous taxa of the eastern Himalayas

(2008) P. Shi et al.   FUNCTIONAL ECOLOGY