Pairing nanoarchitectonics of oligodeoxyribonucleotides with complex diversity: concatemers and self-limited complexes

Non-B DNA: a major contributor to small- and large-scale variation in nucleotide substitution frequencies across the genome

(2021) Wilfried M. Guiblet et al.   NUCLEIC ACIDS RESEARCH

Dynamism of Supramolecular DNA/RNA Nanoarchitectonics: from Interlocked Structures to Molecular Machines

(2020) Xingguo Liang et al.   BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN

On the existence and functionality of topologically associating domains

(2020) Jonathan A. Beagan et al.   NATURE GENETICS

Hybridization Chain Reactions Targeting the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)

(2020) Tzu-Heng Wu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A domain-level DNA strand displacement reaction enumerator allowing arbitrary non-pseudoknotted secondary structures

(2020) Stefan Badelt et al.   Journal of the Royal Society Interface

Meta-DNA structures

(2020) Guangbao Yao et al.   Nature Chemistry

Bottom-Up Self-Assembly Based on DNA Nanotechnology

(2020) Xuehui Yan et al.   Nanomaterials

The Recent Development of Hybridization Chain Reaction Strategies in Biosensors

(2020) Chuyan Zhang et al.   ACS Sensors

Self-Limiting Polymerization of DNA Origami Subunits with Strain Accumulation

(2020) Jonathan F. Berengut et al.   ACS Nano

Toehold-Mediated Selective Assembly of Compact Discrete DNA Nanostructures

(2020) Vladimir A. Brylev et al.   LANGMUIR

Minimalist Design of a Stimuli-Responsive Spherical Nucleic Acid for Conditional Delivery of Oligonucleotide Therapeutics

(2019) Hassan H. Fakih et al.   ACS Applied Materials & Interfaces

Uptake and Fate of Fluorescently Labeled DNA Nanostructures in Cellular Environments: A Cautionary Tale

(2019) Aurélie Lacroix et al.   ACS Central Science

p53 Binds Preferentially to Non-B DNA Structures Formed by the Pyrimidine-Rich Strands of GAA·TTC Trinucleotide Repeats Associated with Friedreich’s Ataxia

(2019) Robert Helma et al.   MOLECULES

DNA complexes with human apurinic/apyrimidinic endonuclease 1: structural insights revealed by pulsed dipolar EPR with orthogonal spin labeling

(2019) Olesya A Krumkacheva et al.   NUCLEIC ACIDS RESEARCH

DNA origami-based aptasensors

(2019) Elham Sameiyan et al.   BIOSENSORS & BIOELECTRONICS

Manipulating Enzymes Properties with DNA Nanostructures

(2019) Jaekel et al.   MOLECULES

A new approach to precise thermodynamic characterization of hybridization properties of modified oligonucleotides: Comparative studies of deoxyribo- and glycine morpholine pentaadenines

(2018) Victor M. Golyshev et al.   BIOPHYSICAL CHEMISTRY

Multifunctional nucleic acid nanostructures for gene therapies

(2018) Jianbing Liu et al.   Nano Research

DNA Nanostructures at the Interface with Biology

(2018) Katherine E. Bujold et al.   Chem

Hybridization chain reaction directed DNA superstructures assembly for biosensing applications

(2017) Dawei Yang et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

The Beauty and Utility of DNA Origami

(2017) Pengfei Wang et al.   Chem

Non-Covalent Fluorescent Labeling of Hairpin DNA Probe Coupled with Hybridization Chain Reaction for Sensitive DNA Detection

(2016) Luna Song et al.   APPLIED SPECTROSCOPY

Evaluation of the Gibbs Free Energy Changes and Melting Temperatures of DNA/DNA Duplexes Using Hybridization Enthalpy Calculated by Molecular Dynamics Simulation

(2015) Alexander A. Lomzov et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Parmbsc1: a refined force field for DNA simulations

(2015) Ivan Ivani et al.   NATURE METHODS

Sequential growth of long DNA strands with user-defined patterns for nanostructures and scaffolds

(2015) Graham D. Hamblin et al.   Nature Communications

Hydrophobic Organic Linkers in the Self-Assembly of Small Molecule-DNA Hybrid Dimers: A Computational–Experimental Study of the Role of Linkage Direction in Product Distributions and Stabilities

(2014) Ilyas Yildirim et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Triggering Hairpin-Free Chain-Branching Growth of Fluorescent DNA Dendrimers for Nonlinear Hybridization Chain Reaction

(2014) Feng Xuan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

RNAstructure: web servers for RNA secondary structure prediction and analysis

(2013) Stanislav Bellaousov et al.   NUCLEIC ACIDS RESEARCH

On the biophysics and kinetics of toehold-mediated DNA strand displacement

(2013) Niranjan Srinivas et al.   NUCLEIC ACIDS RESEARCH

Three-Dimensional Organization of Block Copolymers on “DNA-Minimal” Scaffolds

(2012) Christopher K. McLaughlin et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

DNA nanomedicine: Engineering DNA as a polymer for therapeutic and diagnostic applications

(2010) Michael J. Campolongo et al.   ADVANCED DRUG DELIVERY REVIEWS

Cooperative Melting in Caged Dimers with Only Two DNA Duplexes

(2010) Ibrahim Eryazici et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Differential stability of DNA crossovers in solution mediated by divalent cations

(2010) Péter Várnai et al.   NUCLEIC ACIDS RESEARCH

Simulation of DNA catenanes

(2009) Alexander Vologodskii et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Bent dsDNA with defined geometric characteristics in terms of complexes of bridged oligonucleotides

(2009) O. A. Vinogradova et al.   RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY

Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations

(2008) In Suk Joung et al.   JOURNAL OF PHYSICAL CHEMISTRY B