RNA Virosphere in a Marine Zooplankton Community in the Subtropical Western North Pacific

Complexity and local specificity of the virome associated with tospovirus-transmitting thrips species.

(2021) M. Chiapello et al.   JOURNAL OF VIROLOGY

New Viral Sequences Identified in the Flavescence Dorée Phytoplasma Vector Scaphoideus titanus

(2020) Sara Ottati et al.   Viruses-Basel

Characterization of viruses in a tapeworm: phylogenetic position, vertical transmission, and transmission to the parasitized host

(2020) Megan A. Hahn et al.   ISME Journal

Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020)

(2020) Peter J. Walker et al.   ARCHIVES OF VIROLOGY

Diverged and Active Partitiviruses in Lichen

(2020) Syun-ichi Urayama et al.   Frontiers in Microbiology

A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning

(2020) Eugenie C Yen et al.   GigaScience

Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean

(2020) Hiroto Kaneko et al.   iScience

Geographic variability in taxonomic composition, standing stock, and productivity of the mesozooplankton community around the Kuroshio Current in the East China Sea

(2018) Toru Kobari et al.   FISHERIES OCEANOGRAPHY

ICTV Virus Taxonomy Profile: Chrysoviridae

(2018) Said A. Ghabrial et al.   JOURNAL OF GENERAL VIROLOGY

ICTV Virus Taxonomy Profile: Hypoviridae

(2018) Nobuhiro Suzuki et al.   JOURNAL OF GENERAL VIROLOGY

Unveiling the RNA virosphere associated with marine microorganisms

(2018) Syun-ichi Urayama et al.   Molecular Ecology Resources

Expansion of the metazoan virosphere: progress, pitfalls, and prospects

(2018) Darren J Obbard   Current Opinion in Virology

ICTV Virus Taxonomy Profile: Dicistroviridae

(2017) S. M Valles et al.   JOURNAL OF GENERAL VIROLOGY

ICTV Virus Taxonomy Profile: Picornaviridae

(2017) R. Zell et al.   JOURNAL OF GENERAL VIROLOGY

High-Resolution Metatranscriptomics Reveals the Ecological Dynamics of Mosquito-Associated RNA Viruses in Western Australia

(2017) Mang Shi et al.   JOURNAL OF VIROLOGY

Comparative metatranscriptomics reveals decline of a neustonic planktonic population

(2016) N. Mojib et al.   LIMNOLOGY AND OCEANOGRAPHY

FLDS: A Comprehensive dsRNA Sequencing Method for Intracellular RNA Virus Surveillance

(2016) Syun-ichi Urayama et al.   MICROBES AND ENVIRONMENTS

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

Identification, characterization and full-length sequence analysis of a novel dsRNA virus isolated from the arboreal ant Camponotus yamaokai

(2015) Satoshi Koyama et al.   JOURNAL OF GENERAL VIROLOGY

A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography

(2015) Syun-ichi Urayama et al.   MICROBES AND ENVIRONMENTS

Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses

(2015) Ci-Xiu Li et al.   eLife

Discovery, Prevalence, and Persistence of Novel Circular Single-Stranded DNA Viruses in the Ctenophores Mnemiopsis leidyi and Beroe ovata

(2015) Mya Breitbart et al.   Frontiers in Microbiology

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Zooplankton May Serve as Transmission Vectors for Viruses Infecting Algal Blooms in the Ocean

(2014) Miguel José Frada et al.   CURRENT BIOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

A mid-term analysis of progress toward international biodiversity targets

(2014) D. P. Tittensor et al.   SCIENCE

Taxonomic reorganization of family Partitiviridae and other recent progress in partitivirus research

(2014) Max L. Nibert et al.   VIRUS RESEARCH

Widespread detection of circular replication initiator protein (rep)-encoding ssDNA viral genomes in estuarine, coastal and open ocean net plankton

(2013) JB Eaglesham et al.   MARINE ECOLOGY PROGRESS SERIES

Molecular and microscopic evidence of viruses in marine copepods

(2013) Darren S. Dunlap et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Seasonality of the copepod assemblages associated with interplay waters off northeastern Taiwan

(2012) Li-Chun Tseng et al.   HELGOLAND MARINE RESEARCH

Are we missing half of the viruses in the ocean?

(2012) Grieg F Steward et al.   ISME Journal

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Cardiomyopathy Syndrome of Atlantic Salmon (Salmo salar L.) Is Caused by a Double-Stranded RNA Virus of the Totiviridae Family

(2011) O. Haugland et al.   JOURNAL OF VIROLOGY

Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data

(2011) AKIFUMI S. TANABE   Molecular Ecology Resources

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

(2011) Christopher S Miller et al.   GENOME BIOLOGY

Complete nucleotide sequences of four dsRNAs associated with a new chrysovirus infecting Aspergillus fumigatus

(2010) Atif Jamal et al.   VIRUS RESEARCH

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Picornavirales, a proposed order of positive-sense single-stranded RNA viruses with a pseudo-T = 3 virion architecture

(2008) Olivier Le Gall et al.   ARCHIVES OF VIROLOGY