Epigenomic Regulators Elongator Complex Subunit 2 and Methyltransferase 1 Differentially Condition the Spaceflight Response in Arabidopsis

Whole-Genome DNA Methylation Analysis in Hydrogen Peroxide Overproducing Transgenic Tobacco Resistant to Biotic and Abiotic Stresses

(2021) Ana L. Villagómez-Aranda et al.   Plants-Basel

DNA Demethylation in Response to Heat Stress in Arabidopsis thaliana

(2021) Urszula Korotko et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Network Analysis of Gene Transcriptions of Arabidopsis thaliana in Spaceflight Microgravity

(2021) Vidya Manian et al.   Genes

Changes in DNA Methylation in Arabidopsis thaliana Plants Exposed Over Multiple Generations to Gamma Radiation

(2021) Pol Laanen et al.   Frontiers in Plant Science

Detection of Genes in Arabidopsis thaliana L. Responding to DNA Damage from Radiation and Other Stressors in Spaceflight

(2021) Vidya Manian et al.   Genes

In Response to Abiotic Stress, DNA Methylation Confers EpiGenetic Changes in Plants

(2021) Zahida Akhter et al.   Plants-Basel

Root Skewing-Associated Genes Impact the Spaceflight Response of Arabidopsis thaliana

(2020) Brandon Califar et al.   Frontiers in Plant Science

Test of Arabidopsis Space Transcriptome: A Discovery Environment to Explore Multiple Plant Biology Spaceflight Experiments

(2020) Richard Barker et al.   Frontiers in Plant Science

Spaceflight induces novel regulatory responses in Arabidopsis seedling as revealed by combined proteomic and transcriptomic analyses

(2020) Colin P. S. Kruse et al.   BMC PLANT BIOLOGY

Plant Elongator—Protein Complex of Diverse Activities Regulates Growth, Development, and Immune Responses

(2020) Magdalena Jarosz et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Epigenetic Mechanisms of Plant Adaptation to Biotic and Abiotic Stresses

(2020) Vasily V. Ashapkin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Relevance of the Unfolded Protein Response to Spaceflight-Induced Transcriptional Reprogramming in Arabidopsis

(2020) Evan Angelos et al.   ASTROBIOLOGY

Interplay between Hormones and Several Abiotic Stress Conditions on Arabidopsis thaliana Primary Root Development

(2020) Brenda Anabel López-Ruiz et al.   Cells

Variation in the transcriptome of different ecotypes of Arabidopsis thaliana reveals signatures of oxidative stress in plant responses to spaceflight

(2019) Won-Gyu Choi et al.   AMERICAN JOURNAL OF BOTANY

Epigenomics in an extraterrestrial environment: organ-specific alteration of DNA methylation and gene expression elicited by spaceflight in Arabidopsis thaliana

(2019) Mingqi Zhou et al.   BMC GENOMICS

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

(2019) Uku Raudvere et al.   NUCLEIC ACIDS RESEARCH

Effect of Salt Stress on Cytosine Methylation within GL2, An Arabidopsis thaliana Gene Involved in Root Epidermal Cell Differentiation. Absence of Inheritance in the Unstressed Progeny

(2019) Cecilia C. Beyrne et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Mechanisms of ROS Regulation of Plant Development and Stress Responses

(2019) Honglin Huang et al.   Frontiers in Plant Science

RNA ‐seq analyses of Arabidopsis thaliana seedlings after exposure to blue‐light phototropic stimuli in microgravity

(2019) Joshua P. Vandenbrink et al.   AMERICAN JOURNAL OF BOTANY

RNAseq Analysis of the Response of Arabidopsis thaliana to Fractional Gravity Under Blue-Light Stimulation During Spaceflight

(2019) Raúl Herranz et al.   Frontiers in Plant Science

Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation inArabidopsis

(2018) Yu Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-base resolution methylome analysis shows epigenetic changes in Arabidopsis seedlings exposed to microgravity spaceflight conditions on board the SJ-10 recoverable satellite

(2018) Peipei Xu et al.   NPJ Microgravity

Dynamic DNA Methylation in Plant Growth and Development

(2018) Arthur Bartels et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The relationship between transgenerational acquired resistance and global DNA methylation in Arabidopsis

(2018) Joost H. M. Stassen et al.   Scientific Reports

Phytopathogen-induced changes to plant methylomes

(2017) Tarek Hewezi et al.   PLANT CELL REPORTS

Cyst Nematode Parasitism Induces Dynamic Changes in the Root Epigenome

(2017) Tarek Hewezi et al.   PLANT PHYSIOLOGY

Genetic dissection of the Arabidopsis spaceflight transcriptome: Are some responses dispensable for the physiological adaptation of plants to spaceflight?

(2017) Anna-Lisa Paul et al.   PLoS One

Plant Elongator-mediated transcriptional control in a chromatin and epigenetic context

(2016) Magdalena Woloszynska et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

A novel blue-light phototropic response is revealed in roots of Arabidopsis thaliana in microgravity

(2016) Joshua P. Vandenbrink et al.   PLANTA

Epigenome confrontation triggers immediate reprogramming of DNA methylation and transposon silencing inArabidopsis thalianaF1 epihybrids

(2016) Mélanie Rigal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The effect of spaceflight on the gravity-sensing auxin gradient of roots: GFP reporter gene microscopy on orbit

(2016) Robert J Ferl et al.   NPJ Microgravity

Transcriptional response of Arabidopsis seedlings during spaceflight reveals peroxidase and cell wall remodeling genes associated with root hair development

(2015) T. Kwon et al.   AMERICAN JOURNAL OF BOTANY

RNA-Directed DNA Methylation: The Evolution of a Complex Epigenetic Pathway in Flowering Plants

(2015) Marjori A. Matzke et al.   Annual Review of Plant Biology

Spaceflight Induces Specific Alterations in the Proteomes of Arabidopsis

(2015) Robert J. Ferl et al.   ASTROBIOLOGY

siRNA-directed DNA Methylation in Plants

(2015) Meng Xie et al.   CURRENT GENOMICS

TheArabidopsis thalianaelongator complex subunit 2 epigenetically affects root development

(2015) Yuebin Jia et al.   JOURNAL OF EXPERIMENTAL BOTANY

High-temperature effect on genes engaged in DNA methylation and affected by DNA methylation in Arabidopsis

(2015) Mladen Naydenov et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Methylome analysis reveals an important role for epigenetic changes in the regulation of theArabidopsisresponse to phosphate starvation

(2015) Lenin Yong-Villalobos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell walls as a stage for intercellular communication regulating shoot meristem development

(2015) Toshiaki Tameshige et al.   Frontiers in Plant Science

A Bird’s-Eye View of Molecular Changes in Plant Gravitropism Using Omics Techniques

(2015) Oliver Schüler et al.   Frontiers in Plant Science

Elongator and its epigenetic role in plant development and responses to abiotic and biotic stresses

(2015) Yezhang Ding et al.   Frontiers in Plant Science

Divergent DNA methylation patterns associated with gene expression in rice cultivars with contrasting drought and salinity stress response

(2015) Rohini Garg et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Genome-wide expression analysis of reactive oxygen species gene network in Mizuna plants grown in long-term spaceflight

(2014) Manabu Sugimoto et al.   BMC PLANT BIOLOGY

Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases

(2014) Xuehua Zhong et al.   CELL

Expression of stress-related genes in zebrawood (Astronium fraxinifolium, Anacardiaceae) seedlings following germination in microgravity

(2014) Peter W. Inglis et al.   GENETICS AND MOLECULAR BIOLOGY

A step towards understanding plant responses to multiple environmental stresses: a genome-wide study

(2014) NASSER SEWELAM et al.   PLANT CELL AND ENVIRONMENT

Differential protein expression profiling of Arabidopsis thaliana callus under microgravity on board the Chinese SZ-8 spacecraft

(2014) Yue Zhang et al.   PLANTA

MOABS: model based analysis of bisulfite sequencing data

(2014) Deqiang Sun et al.   GENOME BIOLOGY

Purification, crystallization and preliminary crystallographic analysis of the 23S rRNA methyltransferase RlmM (Cm2498) fromEscherichia coli

(2013) Hong-Yue Guo et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

Organ-specific remodeling of the Arabidopsis transcriptome in response to spaceflight

(2013) Anna-Lisa Paul et al.   BMC PLANT BIOLOGY

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

Structural insights into Elongator function

(2013) Sebastian Glatt et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Methylating the DNA of the Most Repressed: Special Access Required

(2013) Craig S. Pikaard   MOLECULAR CELL

The actin cytoskeleton is a suppressor of the endogenous skewing behaviour ofArabidopsisprimary roots in microgravity

(2013) J. Nakashima et al.   PLANT BIOLOGY

The Arabidopsis Elongator Complex Subunit2 Epigenetically Regulates Plant Immune Responses

(2013) Y. Wang et al.   PLANT CELL

Transcriptome analyses of Arabidopsis thaliana seedlings grown in space: implications for gravity-responsive genes

(2013) Melanie J. Correll et al.   PLANTA

Genome-Wide Quantitative Identification of DNA Differentially Methylated Sites in Arabidopsis Seedlings Growing at Different Water Potential

(2013) Alejandro C. Colaneri et al.   PLoS One

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

(2013) A. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spaceflight engages heat shock protein and other molecular chaperone genes in tissue culture cells of Arabidopsis thaliana

(2012) Agata K. Zupanska et al.   AMERICAN JOURNAL OF BOTANY

Regulation of plant gravity sensing and signaling by the actin cytoskeleton

(2012) Elison B. Blancaflor   AMERICAN JOURNAL OF BOTANY

Effects of abiotic stress on plants: a systems biology perspective

(2012) Grant R Cramer et al.   BMC PLANT BIOLOGY

Plant growth strategies are remodeled by spaceflight

(2012) Anna-Lisa Paul et al.   BMC PLANT BIOLOGY

ArabidopsisbZIP16 Transcription Factor Integrates Light and Hormone Signaling Pathways to Regulate Early Seedling Development

(2012) Wen-Ping Hsieh et al.   PLANT CELL

The Progeny of Arabidopsis thaliana Plants Exposed to Salt Exhibit Changes in DNA Methylation, Histone Modifications and Gene Expression

(2012) Andriy Bilichak et al.   PLoS One

Dynamic differential methylation facilitates pathogen stress response in Arabidopsis

(2012) X. Zhang   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Epigenetic contribution to stress adaptation in plants

(2011) Marie Mirouze et al.   CURRENT OPINION IN PLANT BIOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Elongator subunit 2 is an accelerator of immune responses in Arabidopsis thaliana

(2010) Christopher T. DeFraia et al.   PLANT JOURNAL

Research on plant abiotic stress responses in the post-genome era: past, present and future

(2010) Takashi Hirayama et al.   PLANT JOURNAL

Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation

(2010) H. Nelissen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

BSMAP: whole genome bisulfite sequence MAPping program

(2009) Yuanxin Xi et al.   BMC BIOINFORMATICS

Elongator mediates ABA responses, oxidative stress resistance and anthocyanin biosynthesis in Arabidopsis

(2009) Xiaofeng Zhou et al.   PLANT JOURNAL

BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

(2008) Tim Hulsen et al.   BMC GENOMICS

Cell Polarity Signaling: Focus on Polar Auxin Transport

(2008) Xiaowei Gao et al.   Molecular Plant

A structural-maintenance-of-chromosomes hinge domain–containing protein is required for RNA-directed DNA methylation

(2008) Tatsuo Kanno et al.   NATURE GENETICS

Gene expression changes induced by space flight in single-cells of the fern Ceratopteris richardii

(2008) Mari L. Salmi et al.   PLANTA