Transposable element-derived sequences in vertebrate development

The Developmental Gene Hypothesis for Punctuated Equilibrium: Combined Roles of Developmental Regulatory Genes and Transposable Elements

(2020) Emily L. Casanova et al.   BIOESSAYS

Transposable elements contribute to cell and species-specific chromatin looping and gene regulation in mammalian genomes

(2020) Adam G. Diehl et al.   Nature Communications

Retroelement—Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution

(2019) Daniil Nikitin et al.   Cells

The Mobilome of Reptiles: Evolution, Structure, and Function

(2019) Stéphane Boissinot et al.   CYTOGENETIC AND GENOME RESEARCH

Transposon molecular domestication and the evolution of the RAG recombinase

(2019) Yuhang Zhang et al.   NATURE

The role of 3D genome organization in development and cell differentiation

(2019) Hui Zheng et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

miR-378a influences vascularization in skeletal muscles

(2019) Bart Krist et al.   CARDIOVASCULAR RESEARCH

The ChAHP Complex Counteracts Chromatin Looping at CTCF Sites that Emerged from SINE Expansions in Mouse

(2019) Lucas J.T. Kaaij et al.   CELL

The RNA-binding protein ILF3 binds to transposable element sequences in SINEUP lncRNAs

(2019) Francesca Fasolo et al.   FASEB JOURNAL

Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells

(2019) Yanxiao Zhang et al.   NATURE GENETICS

Xist RNA in action: Past, present, and future

(2019) Agnese Loda et al.   PLoS Genetics

Loss-of-Function Variants in PPP1R12A: From Isolated Sex Reversal to Holoprosencephaly Spectrum and Urogenital Malformations

(2019) Joel J. Hughes et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A primate-specific retroviral enhancer wires the XACT lncRNA into the core pluripotency network in humans

(2019) Miguel Casanova et al.   Nature Communications

Transposable elements generate regulatory novelty in a tissue-specific fashion

(2018) Marco Trizzino et al.   BMC GENOMICS

The Neuronal Gene Arc Encodes a Repurposed Retrotransposon Gag Protein that Mediates Intercellular RNA Transfer

(2018) Elissa D. Pastuzyn et al.   CELL

Retrovirus-like Gag Protein Arc1 Binds RNA and Traffics across Synaptic Boutons

(2018) James Ashley et al.   CELL

A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity

(2018) Michelle Percharde et al.   CELL

PNMA family: Protein interaction network and cell signalling pathways implicated in cancer and apoptosis

(2018) Siew Wai Pang et al.   CELLULAR SIGNALLING

The evolutionary conservation of the bidirectional activity of the NWC gene promoter in jawed vertebrates and the domestication of the RAG transposon

(2018) Lukasz Sniezewski et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Repeat associated mechanisms of genome evolution and function revealed by theMus caroliandMus paharigenomes

(2018) David Thybert et al.   GENOME RESEARCH

Parentally inherited long non-coding RNA Cyrano is involved in zebrafish neurodevelopment

(2018) Mayuresh Anant Sarangdhar et al.   NUCLEIC ACIDS RESEARCH

MicroRNAs miR-19, miR-340, miR-374 and miR-542 regulate MID1 protein expression

(2018) Kristoffer Unterbruner et al.   PLoS One

Structural determinants of the SINE B2 element embedded in the long non-coding RNA activator of translation AS Uchl1

(2018) Peter Podbevšek et al.   Scientific Reports

Identification of Transposable Elements Contributing to Tissue-Specific Expression of Long Non-Coding RNAs

(2018) Takafumi Chishima et al.   Genes

Heteromeric RNP Assembly at LINEs Controls Lineage-Specific RNA Processing

(2018) Jan Attig et al.   CELL

Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs

(2018) Joana Carlevaro-Fita et al.   GENOME RESEARCH

Amphioxus functional genomics and the origins of vertebrate gene regulation

(2018) Ferdinand Marlétaz et al.   NATURE

Splicing of long non-coding RNAs primarily depends on polypyrimidine tract and 5′ splice-site sequences due to weak interactions with SR proteins

(2018) Zuzana Krchňáková et al.   NUCLEIC ACIDS RESEARCH

piRNAs and their diverse roles: a transposable element-driven tactic for gene regulation?

(2017) Arpita Sarkar et al.   FASEB JOURNAL

New insights into the evolutionary origins of the recombination-activating gene proteins and V(D)J recombination

(2017) Lina Marcela Carmona et al.   FEBS Journal

Transposable elements are the primary source of novelty in primate gene regulation

(2017) Marco Trizzino et al.   GENOME RESEARCH

Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes

(2017) Vedran Franke et al.   GENOME RESEARCH

ZCCHC12, a novel oncogene in papillary thyroid cancer

(2017) Ouchen Wang et al.   JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY

Leptin action in normal and pathological pregnancies

(2017) Antonio Pérez-Pérez et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Origin of a rapidly evolving homeostatic control system programming testis function

(2017) Pengli Bu et al.   JOURNAL OF ENDOCRINOLOGY

The Exonization and Functionalization of an Alu-J Element in the Protein Coding Region of Glycoprotein Hormone Alpha Gene Represent a Novel Mechanism to the Evolution of Hemochorial Placentation in Primates

(2017) Haidi Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transposable Element Exaptation into Regulatory Regions Is Rare, Influenced by Evolutionary Age, and Subject to Pleiotropic Constraints

(2017) Corinne N. Simonti et al.   MOLECULAR BIOLOGY AND EVOLUTION

Beyond mRNA: The role of non-coding RNAs in normal and aberrant hematopoiesis

(2017) Mark C. Wilkes et al.   MOLECULAR GENETICS AND METABOLISM

LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo

(2017) Joanna W Jachowicz et al.   NATURE GENETICS

The functions and unique features of long intergenic non-coding RNA

(2017) Julia D. Ransohoff et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

An endogenous retroviral envelope syncytin and its cognate receptor identified in the viviparous placentalMabuyalizard

(2017) Guillaume Cornelis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation

(2017) Benjamin Soibam   RNA

Transposable Element Domestication As an Adaptation to Evolutionary Conflicts

(2017) Diwash Jangam et al.   TRENDS IN GENETICS

The emergence of piRNAs against transposon invasion to preserve mammalian genome integrity

(2017) Christina Ernst et al.   Nature Communications

lncRNAs in development and disease: from functions to mechanisms

(2017) M. Joaquina Delás et al.   Open Biology

Systematic identification and characterization of regulatory elements derived from human endogenous retroviruses

(2017) Jumpei Ito et al.   PLoS Genetics

Activity-Dependent Arc Expression and Homeostatic Synaptic Plasticity Are Altered in Neurons from a Mouse Model of Angelman Syndrome

(2017) Elissa D. Pastuzyn et al.   Frontiers in Molecular Neuroscience

MIR retroposon exonization promotes evolutionary variability and generates species-specific expression of IGF-1 splice variants

(2016) Giosuè Annibalini et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Discovery of an Active RAG Transposon Illuminates the Origins of V(D)J Recombination

(2016) Shengfeng Huang et al.   CELL

The impact of transposable elements on mammalian development

(2016) Jose L. Garcia-Perez et al.   DEVELOPMENT

Transposable Elements and Their KRAB-ZFP Controllers Regulate Gene Expression in Adult Tissues

(2016) Gabriela Ecco et al.   DEVELOPMENTAL CELL

Collaboration of RAG2 with RAG1-like proteins during the evolution of V(D)J recombination

(2016) Lina Marcela Carmona et al.   GENES & DEVELOPMENT

Activity-Regulated Cytoskeleton-Associated Protein Dysfunction May Contribute to Memory Disorder and Earlier Detection of Autism Spectrum Disorders

(2016) Abdulrahman Mohammed Alhowikan   MEDICAL PRINCIPLES AND PRACTICE

Regulatory activities of transposable elements: from conflicts to benefits

(2016) Edward B. Chuong et al.   NATURE REVIEWS GENETICS

Long non-coding RNAs: spatial amplifiers that control nuclear structure and gene expression

(2016) Jesse M. Engreitz et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Regulatory evolution of innate immunity through co-option of endogenous retroviruses

(2016) E. B. Chuong et al.   SCIENCE

Genetic Disruption of Arc/Arg3.1 in Mice Causes Alterations in Dopamine and Neurobehavioral Phenotypes Related to Schizophrenia

(2016) Francesca Managò et al.   Cell Reports

Nuclear organization and 3D chromatin architecture in cognition and neuropsychiatric disorders

(2016) Alejandro Medrano-Fernández et al.   Molecular Brain

Coordinately Co-opted Multiple Transposable Elements Constitute an Enhancer for wnt5a Expression in the Mammalian Secondary Palate

(2016) Hidenori Nishihara et al.   PLoS Genetics

Restricting retrotransposons: a review

(2016) John L. Goodier   Mobile DNA

Identification of antisense long noncoding RNAs that function as SINEUPs in human cells

(2016) Aleks Schein et al.   Scientific Reports

MicroRNA, miR-374b, directly targets Myf6 and negatively regulates C2C12 myoblasts differentiation

(2015) Zhiyuan Ma et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2α and ZNF451 in mammals

(2015) Federico Abascal et al.   BIOINFORMATICS

Evolution of the RAG1-RAG2 locus: both proteins came from the same transposon

(2015) Vladimir V Kapitonov et al.   Biology Direct

Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions

(2015) Darío G. Lupiáñez et al.   CELL

MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes

(2015) Peng Zhang et al.   CELL RESEARCH

Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates

(2015) Ian A. Warren et al.   CHROMOSOME RESEARCH

Role of transposable elements in genomic rearrangement, evolution, gene regulation and epigenetics in primates

(2015) Hee-Eun Lee et al.   GENES & GENETIC SYSTEMS

Baton pass hypothesis: successive incorporation of unconserved endogenous retroviral genes for placentation during mammalian evolution

(2015) Kazuhiko Imakawa et al.   GENES TO CELLS

Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates

(2015) Domitille Chalopin et al.   Genome Biology and Evolution

The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming

(2015) Jens Durruthy-Durruthy et al.   NATURE GENETICS

Review: hCGs: Different sources of production, different glycoforms and functions

(2015) T. Fournier et al.   PLACENTA

MIR retrotransposon sequences provide insulators to the human genome

(2015) Jianrong Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Retroviral envelope gene captures andsyncytinexaptation for placentation in marsupials

(2015) Guillaume Cornelis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SINEUPs are modular antisense long non-coding RNAs that increase synthesis of target proteins in cells

(2015) Silvia Zucchelli et al.   Frontiers in Cellular Neuroscience

A family of transposable elements co-opted into developmental enhancers in the mouse neocortex

(2015) James H. Notwell et al.   Nature Communications

Piwi Proteins and piRNAs in Mammalian Oocytes and Early Embryos

(2015) Elke F. Roovers et al.   Cell Reports

Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy

(2015) Vincent J. Lynch et al.   Cell Reports

Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species

(2015) Hadas Hezroni et al.   Cell Reports

Cognitive Function Related to the Sirh11/Zcchc16 Gene Acquired from an LTR Retrotransposon in Eutherians

(2015) Masahito Irie et al.   PLoS Genetics

The Role of Transposable Elements in the Origin and Evolution of MicroRNAs in Human

(2015) Sheng Qin et al.   PLoS One

Epigenome-wide analysis of piRNAs in gene-specific DNA methylation

(2015) Alan Fu et al.   RNA Biology

Pachytene piRNAs instruct massive mRNA elimination during late spermiogenesis

(2014) Lan-Tao Gou et al.   CELL RESEARCH

Sirh7/Ldoc1 knockout mice exhibit placental P4 overproduction and delayed parturition

(2014) M. Naruse et al.   DEVELOPMENT

Developmental wave of Brn3b expression leading to RGC fate specification is synergistically maintained by miR-23a and miR-374

(2014) Vazhanthodi A. Rasheed et al.   Developmental Neurobiology

Retrotransposons and pseudogenes regulate mRNAs and lncRNAs via the piRNA pathway in the germline

(2014) Toshiaki Watanabe et al.   GENOME RESEARCH

Widespread contribution of transposable elements to the innovation of gene regulatory networks

(2014) Vasavi Sundaram et al.   GENOME RESEARCH

Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

(2014) S. Washietl et al.   GENOME RESEARCH

Comparative genomic approach reveals novel conserved microRNAs in Inner Mongolia cashmere goat skin and longissimus dorsi

(2014) Rui Su et al.   MOLECULAR BIOLOGY REPORTS

Jarid2 Is Implicated in the Initial Xist-Induced Targeting of PRC2 to the Inactive X Chromosome

(2014) Simão Teixeira da Rocha et al.   MOLECULAR CELL

De novo mutations in schizophrenia implicate synaptic networks

(2014) Menachem Fromer et al.   NATURE

A polygenic burden of rare disruptive mutations in schizophrenia

(2014) Shaun M. Purcell et al.   NATURE

Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells

(2014) Jichang Wang et al.   NATURE

The evolution of lncRNA repertoires and expression patterns in tetrapods

(2014) Anamaria Necsulea et al.   NATURE

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

(2014) Alexandre Fort et al.   NATURE GENETICS

RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia

(2014) Elli Papaemmanuil et al.   NATURE GENETICS

Polintons: a hotbed of eukaryotic virus, transposon and plasmid evolution

(2014) Mart Krupovic et al.   NATURE REVIEWS MICROBIOLOGY

The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity

(2014) Xinyi Lu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs

(2014) R. Johnson et al.   RNA

Myeloid-Derived microRNAs, miR-223, miR27a, and miR-652, Are Dominant Players in Myeloid Regulation

(2014) Anna B. Gilicze et al.   Biomed Research International

Alport syndrome caused by aCOL4A5deletion and exonization of an adjacentAluY

(2014) Kandai Nozu et al.   Molecular Genetics & Genomic Medicine

Genetic and Epigenetic Regulation of Human lincRNA Gene Expression

(2013) Konstantin Popadin et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Retroviruses facilitate the rapid evolution of the mammalian placenta

(2013) Edward B. Chuong   BIOESSAYS

Functional divergence of the rapidly evolving miR-513 subfamily in primates

(2013) Zhenghua Sun et al.   BMC EVOLUTIONARY BIOLOGY

A Retrotransposon-Driven Dicer Isoform Directs Endogenous Small Interfering RNA Production in Mouse Oocytes

(2013) Matyas Flemr et al.   CELL

Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements

(2013) Kathi Zarnack et al.   CELL

Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements

(2013) J. L. Harding et al.   GENOME RESEARCH

miRNA-374 Regulates Dexamethasone-induced Differentiation of Primary Cultures of Porcine Adipocytes

(2013) S. Pan et al.   HORMONE AND METABOLIC RESEARCH

Functional microRNAs and target sites are created by lineage-specific transposition

(2013) Ryan M. Spengler et al.   HUMAN MOLECULAR GENETICS

DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape

(2013) Mingchao Xie et al.   NATURE GENETICS

Endogenous retroviruses function as species-specific enhancer elements in the placenta

(2013) Edward B Chuong et al.   NATURE GENETICS

Paleovirology of 'syncytins', retroviral env genes exapted for a role in placentation

(2013) C. Lavialle et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

ZBED Evolution: Repeated Utilization of DNA Transposons as Regulators of Diverse Host Functions

(2013) Alexander Hayward et al.   PLoS One

Long noncoding RNAs in development and disease of the central nervous system

(2013) Shi-Yan Ng et al.   TRENDS IN GENETICS

A novel human endogenous retroviral protein inhibits cell-cell fusion

(2013) Jun Sugimoto et al.   Scientific Reports

Binding of TFIIIC to SINE Elements Controls the Relocation of Activity-Dependent Neuronal Genes to Transcription Factories

(2013) Luca Crepaldi et al.   PLoS Genetics

The Majority of Primate-Specific Regulatory Sequences Are Derived from Transposable Elements

(2013) Pierre-Étienne Jacques et al.   PLoS Genetics

Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs

(2013) Aurélie Kapusta et al.   PLoS Genetics

Genome Regulation by Long Noncoding RNAs

(2012) John L. Rinn et al.   Annual Review of Biochemistry

Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages

(2012) Dominic Schmidt et al.   CELL

Embryonic stem cell potency fluctuates with endogenous retrovirus activity

(2012) Todd S. Macfarlan et al.   NATURE

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat

(2012) Claudia Carrieri et al.   NATURE

Topological domains in mammalian genomes identified by analysis of chromatin interactions

(2012) Jesse R. Dixon et al.   NATURE

Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis

(2012) Anastassios Vourekas et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Transposable elements domesticated and neofunctionalized by eukaryotic genomes

(2012) Ahmed M. Alzohairy et al.   PLASMID

Expression Profiling of Human Immune Cell Subsets Identifies miRNA-mRNA Regulatory Relationships Correlated with Cell Type Specific Expression

(2012) Florence Allantaz et al.   PLoS One

Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae

(2012) Martin Carr et al.   PLoS One

Blockade of Pachytene piRNA Biogenesis Reveals a Novel Requirement for Maintaining Post-Meiotic Germline Genome Integrity

(2012) Ke Zheng et al.   PLoS Genetics

Rapid Turnover of Long Noncoding RNAs and the Evolution of Gene Expression

(2012) Claudia Kutter et al.   PLoS Genetics

Transposable elements reveal a stem cell-specific class of long noncoding RNAs

(2012) David Kelley et al.   GENOME BIOLOGY

Arc/Arg3.1 Regulates an Endosomal Pathway Essential for Activity-Dependent β-Amyloid Generation

(2011) Jing Wu et al.   CELL

Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution

(2011) Igor Ulitsky et al.   CELL

MicroRNA-132 targets HB-EGF upon IgE-mediated activation in murine and human mast cells

(2011) Viktor Molnár et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Dioxin receptor and SLUG transcription factors regulate the insulator activity of B1 SINE retrotransposons via an RNA polymerase switch

(2011) A. C. Roman et al.   GENOME RESEARCH

Convergent Evolution of Endometrial Prolactin Expression in Primates, Mice, and Elephants Through the Independent Recruitment of Transposable Elements

(2011) Deena Emera et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals

(2011) Vincent J Lynch et al.   NATURE GENETICS

PIWI-interacting small RNAs: the vanguard of genome defence

(2011) Mikiko C. Siomi et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Regulation of Neutrophil Senescence by MicroRNAs

(2011) Jon R. Ward et al.   PLoS One

Widespread establishment and regulatory impact of Alu exons in human genes

(2011) S. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Control of mTORC1 signaling by the Opitz syndrome protein MID1

(2011) E. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A pair of co-opted retroviral envelope syncytin genes is required for formation of the two-layered murine placental syncytiotrophoblast

(2011) A. Dupressoir et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selective gene expression in regions of primate neocortex: Implications for cortical specialization

(2011) Tetsuo Yamamori   PROGRESS IN NEUROBIOLOGY

piRNA profiling during specific stages of mouse spermatogenesis

(2011) H. Gan et al.   RNA

Tissue physiology and pathology of aromatase

(2011) Carlos Stocco   STEROIDS

Retrotransposon-Induced Heterochromatin Spreading in the Mouse Revealed by Insertional Polymorphisms

(2011) Rita Rebollo et al.   PLoS Genetics

LINE-1 Activity in Facultative Heterochromatin Formation during X Chromosome Inactivation

(2010) Jennifer C. Chow et al.   CELL

The Angelman Syndrome Protein Ube3A Regulates Synapse Development by Ubiquitinating Arc

(2010) Paul L. Greer et al.   CELL

Essential genes for astroglial development and axon pathfinding during zebrafish embryogenesis

(2010) Michael J.F. Barresi et al.   DEVELOPMENTAL DYNAMICS

XLMR candidate mouse gene, Zcchc12 (Sizn1) is a novel marker of Cajal–Retzius cells

(2010) Ginam Cho et al.   GENE EXPRESSION PATTERNS

Changes in Hox genes’ structure and function during the evolution of the squamate body plan

(2010) Nicolas Di-Poï et al.   NATURE

Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells

(2010) Sabine Loewer et al.   NATURE GENETICS

Transposable elements have rewired the core regulatory network of human embryonic stem cells

(2010) Galih Kunarso et al.   NATURE GENETICS

Characteristics of Transposable Element Exonization within Human and Mouse

(2010) Noa Sela et al.   PLoS One

Retroviral infection in vivo requires an immune escape virulence factor encrypted in the envelope protein of oncoretroviruses

(2010) Géraldine Schlecht-Louf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Efficiency of Xist-mediated silencing on autosomes is linked to chromosomal domain organisation

(2010) Y Amy Tang et al.   Epigenetics & Chromatin

Transcriptional Rewiring of the Sex Determining dmrt1 Gene Duplicate by Transposable Elements

(2010) Amaury Herpin et al.   PLoS Genetics

The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates

(2010) Noa Sela et al.   GENOME BIOLOGY

Inherent promoter bidirectionality facilitates maintenance of sequence integrity and transcription of parasitic DNA in mammalian genomes

(2009) Paul Kalitsis et al.   BMC GENOMICS

Transcription of the rat testis-specific Rtdpoz-T1 and -T2 retrogenes during embryo development: co-transcription and frequent exonisation of transposable element sequences

(2009) Chiu-Jung Huang et al.   BMC MOLECULAR BIOLOGY

Syncytin immunoreactivity in colorectal cancer: Potential prognostic impact

(2009) Julie Mou Larsen et al.   CANCER LETTERS

Paraneoplastic Antigen-Like 5 Gene (PNMA5) Is Preferentially Expressed in the Association Areas in a Primate Specific Manner

(2009) Masafumi Takaji et al.   CEREBRAL CORTEX

Endogenous retroviral LTRs as promoters for human genes: A critical assessment

(2009) Carla J. Cohen et al.   GENE

Atypical relaxation of structural constraints in Hox gene clusters of the green anole lizard

(2009) N. Di-Poi et al.   GENOME RESEARCH

Identification of Zinc-finger BED Domain-containing 3 (Zbed3) as a Novel Axin-interacting Protein That Activates Wnt/β-Catenin Signaling

(2009) Ting Chen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Expression of Pleiotrophin and its Receptors in Human Placenta Suggests Roles in Trophoblast Life Cycle and Angiogenesis

(2009) M. Ball et al.   PLACENTA

Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution

(2009) R. Assis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

ZBED6, a Novel Transcription Factor Derived from a Domesticated DNA Transposon Regulates IGF2 Expression and Muscle Growth

(2009) Ellen Markljung et al.   PLOS BIOLOGY

The Take and Give Between Retrotransposable Elements and their Hosts

(2008) Arthur Beauregard et al.   Annual Review of Genetics

DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes

(2008) S. Kuramochi-Miyagawa et al.   GENES & DEVELOPMENT

Evolution of the mammalian transcription factor binding repertoire via transposable elements

(2008) G. Bourque et al.   GENOME RESEARCH

Origin of Primate Orphan Genes: A Comparative Genomics Approach

(2008) M. Toll-Riera et al.   MOLECULAR BIOLOGY AND EVOLUTION

A piRNA Pathway Primed by Individual Transposons Is Linked to De Novo DNA Methylation in Mice

(2008) Alexei A. Aravin et al.   MOLECULAR CELL

Kcnq1ot1 Antisense Noncoding RNA Mediates Lineage-Specific Transcriptional Silencing through Chromatin-Level Regulation

(2008) Radha Raman Pandey et al.   MOLECULAR CELL

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

(2008) Andrew Grimson et al.   NATURE

Role of retrotransposon-derived imprinted gene, Rtl1, in the feto-maternal interface of mouse placenta

(2008) Yoichi Sekita et al.   NATURE GENETICS

A universal classification of eukaryotic transposable elements implemented in Repbase

(2008) Vladimir V. Kapitonov et al.   NATURE REVIEWS GENETICS

Elongation Factor 2 and Fragile X Mental Retardation Protein Control the Dynamic Translation of Arc/Arg3.1 Essential for mGluR-LTD

(2008) Sungjin Park et al.   NEURON

Satb2 Is a Postmitotic Determinant for Upper-Layer Neuron Specification in the Neocortex

(2008) Olga Britanova et al.   NEURON

Satb2 Regulates Callosal Projection Neuron Identity in the Developing Cerebral Cortex

(2008) Elizabeth A. Alcamo et al.   NEURON

A Dual Origin of the Xist Gene from a Protein-Coding Gene and a Set of Transposable Elements

(2008) Eugeny A. Elisaphenko et al.   PLoS One

Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo

(2008) A. C. Roman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Possible involvement of SINEs in mammalian-specific brain formation

(2008) T. Sasaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin

(2008) T. Nagano et al.   SCIENCE