In Vivo Transcriptome of Lactobacillus acidophilus and Colonization Impact on Murine Host Intestinal Gene Expression

Adaptive Strategies of the Candidate Probiotic E. coli Nissle in the Mammalian Gut

(2019) Nathan Crook et al.   Cell Host & Microbe

Putative Adhesion Factors in Vaginal Lactobacillus gasseri DSM 14869: Functional Characterization

(2019) Zhu Zeng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nutrient composition and digestibility of energy and nutrients in wheat middlings and red dog fed to growing pigs1

(2018) G A Casas et al.   JOURNAL OF ANIMAL SCIENCE

Commensal microbiota induces colonic barrier structure and functions that contribute to homeostasis

(2018) Christina L. Hayes et al.   Scientific Reports

Redox signaling mediated by the gut microbiota

(2017) Rheinallt M. Jones et al.   FREE RADICAL BIOLOGY AND MEDICINE

Redox signaling in the gastrointestinal tract

(2017) Salvador Pérez et al.   FREE RADICAL BIOLOGY AND MEDICINE

Intestinal Muc2 mucin O-glycosylation is affected by microbiota and regulated by differential expression of glycosyltranferases

(2017) Liisa Arike et al.   GLYCOBIOLOGY

The Roles of Glutamine in the Intestine and Its Implication in Intestinal Diseases

(2017) Min-Hyun Kim et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Lactobacillus acidophilus Metabolizes Dietary Plant Glucosides and Externalizes Their Bioactive Phytochemicals

(2017) Mia C. Theilmann et al.   mBio

Investigating the Effect of Growth Phase on the Surface-Layer Associated Proteome of Lactobacillus acidophilus Using Quantitative Proteomics

(2017) Courtney Klotz et al.   Frontiers in Microbiology

Conserved S-Layer-Associated Proteins Revealed by Exoproteomic Survey of S-Layer-Forming Lactobacilli

(2015) Brant R. Johnson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

CiVi: circular genome visualization with unique features to analyze sequence elements: Fig. 1.

(2015) Lex Overmars et al.   BIOINFORMATICS

Increased Expression of DUOX2 Is an Epithelial Response to Mucosal Dysbiosis Required for Immune Homeostasis in Mouse Intestine

(2015) Helmut Grasberger et al.   GASTROENTEROLOGY

Functional role of oppA encoding an oligopeptide-binding protein from Lactobacillus salivarius Ren in bile tolerance

(2015) Guohong Wang et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Sortase-deficient lactobacilli: effect on immunomodulation and gut retention

(2015) Emma K. Call et al.   MICROBIOLOGY-SGM

Insights into glycogen metabolism in Lactobacillus acidophilus: impact on carbohydrate metabolism, stress tolerance and gut retention

(2014) Yong Jun Goh et al.   Microbial Cell Factories

The gut microbiota engages different signaling pathways to induce Duox2 expression in the ileum and colon epithelium

(2014) F Sommer et al.   Mucosal Immunology

Effect of intestinal colonisation by two Lactobacillus strains on the immune response of gnotobiotic mice

(2014) R.S. Steinberg et al.   Beneficial Microbes

A unique in vivo experimental approach reveals metabolic adaptation of the probiotic Propionibacterium freudenreichii to the colon environment

(2013) Taous Saraoui et al.   BMC GENOMICS

The underling mechanism of bacterial TetR/AcrR family transcriptional repressors

(2013) Wanyan Deng et al.   CELLULAR SIGNALLING

The life history ofLactobacillus acidophilusas a probiotic: a tale of revisionary taxonomy, misidentification and commercial success

(2013) Matthew Bull et al.   FEMS MICROBIOLOGY LETTERS

Identification of extracellular surface-layer associated proteins in Lactobacillus acidophilus NCFM

(2013) B. Johnson et al.   MICROBIOLOGY-SGM

A functional glycogen biosynthesis pathway inLactobacillus acidophilus: expression and analysis of theglgoperon

(2013) Yong Jun Goh et al.   MOLECULAR MICROBIOLOGY

Construction and Immunological Evaluation of Dual Cell Surface Display of HIV-1 Gag and Salmonella enterica Serovar Typhimurium FliC in Lactobacillus acidophilus for Vaccine Delivery

(2012) Akinobu Kajikawa et al.   Clinical and Vaccine Immunology

Enzymology and Structure of the GH13_31 Glucan 1,6- -Glucosidase That Confers Isomaltooligosaccharide Utilization in the Probiotic Lactobacillus acidophilus NCFM

(2012) M. S. Moller et al.   JOURNAL OF BACTERIOLOGY

Recombinational Switching of the Clostridium difficile S-Layer and a Novel Glycosylation Gene Cluster Revealed by Large-Scale Whole-Genome Sequencing

(2012) Kate E. Dingle et al.   JOURNAL OF INFECTIOUS DISEASES

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Transcriptional Analysis of Prebiotic Uptake and Catabolism by Lactobacillus acidophilus NCFM

(2012) Joakim Mark Andersen et al.   PLoS One

Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing

(2012) H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88

(2011) Erik Larsson et al.   GUT

Transcriptional and functional analysis of galactooligosaccharide uptake by lacS in Lactobacillus acidophilus

(2011) J. M. Andersen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of induced colonic inflammation by Lactobacillus acidophilus deficient in lipoteichoic acid

(2011) M. Mohamadzadeh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Requirement of Purine and Pyrimidine Synthesis for Colonization of the Mouse Intestine by Escherichia coli

(2010) J. Vogel-Scheel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional Roles of Aggregation-Promoting-Like Factor in Stress Tolerance and Adherence of Lactobacillus acidophilus NCFM

(2010) Y. J. Goh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Convergence in probiotic Lactobacillus gut-adaptive responses in humans and mice

(2010) Maria L Marco et al.   ISME Journal

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Characterization of Rhamnosidases from Lactobacillus plantarum and Lactobacillus acidophilus

(2009) J. Beekwilder et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development and Application of a upp-Based Counterselective Gene Replacement System for the Study of the S-Layer Protein SlpX of Lactobacillus acidophilus NCFM

(2009) Y. J. Goh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Lifestyle ofLactobacillus plantarumin the mouse caecum

(2009) Maria L. Marco et al.   ENVIRONMENTAL MICROBIOLOGY

Probiotic Effects on Cold and Influenza-Like Symptom Incidence and Duration in Children

(2009) G. J. Leyer et al.   PEDIATRICS

Dendritic cell targeting of Bacillus anthracis protective antigen expressed by Lactobacillus acidophilus protects mice from lethal challenge

(2009) M. Mohamadzadeh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lactobacillus phylogenomics - towards a reclassification of the genus

(2008) M. J. Claesson et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Identification of Genes Associated with the Long-Gut-Persistence Phenotype of the Probiotic Lactobacillus johnsonii Strain NCC533 Using a Combination of Genomics and Transcriptome Analysis

(2008) E. Denou et al.   JOURNAL OF BACTERIOLOGY

Nucleotide Biosynthesis Is Critical for Growth of Bacteria in Human Blood

(2008) Shalaka Samant et al.   PLoS Pathogens

S layer protein A of Lactobacillus acidophilus NCFM regulates immature dendritic cell and T cell functions

(2008) S. R. Konstantinov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA