Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites

Basement Membrane Regulates Fibronectin Organization Using Sliding Focal Adhesions Driven by a Contractile Winch

(2020) Jiaoyang Lu et al.   DEVELOPMENTAL CELL

Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids

(2020) Susanne C. van den Brink et al.   NATURE

PlotTwist: A web app for plotting and annotating continuous data

(2020) Joachim Goedhart   PLOS BIOLOGY

Epigenetic regulator function through mouse gastrulation

(2020) Stefanie Grosswendt et al.   NATURE

Generalizing RNA velocity to transient cell states through dynamical modeling

(2020) Volker Bergen et al.   NATURE BIOTECHNOLOGY

Characterization of cell fate probabilities in single-cell data with Palantir

(2019) Manu Setty et al.   NATURE BIOTECHNOLOGY

The emergent landscape of the mouse gut endoderm at single-cell resolution

(2019) Sonja Nowotschin et al.   NATURE

Engineering Stem Cell Self-organization to Build Better Organoids

(2019) Jonathan A. Brassard et al.   Cell Stem Cell

Self-organization of stem cells into embryos: A window on early mammalian development

(2019) Marta N. Shahbazi et al.   SCIENCE

Establishing neuronal diversity in the spinal cord: a time and a place

(2019) Andreas Sagner et al.   DEVELOPMENT

Recovering Gene Interactions from Single-Cell Data Using Data Diffusion

(2018) David van Dijk et al.   CELL

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Deconstructing and reconstructing the mouse and human early embryo

(2018) Marta N. Shahbazi et al.   NATURE CELL BIOLOGY

HHEX is a transcriptional regulator of the VEGFC/FLT4/PROX1 signaling axis during vascular development

(2018) Sébastien Gauvrit et al.   Nature Communications

RNA velocity of single cells

(2018) Gioele La Manno et al.   NATURE

Multi-axial self-organization properties of mouse embryonic stem cells into gastruloids

(2018) Leonardo Beccari et al.   NATURE

Mechanical perspectives on the anterior-posterior axis polarization of mouse implanted embryos

(2017) Isao Matsuo et al.   MECHANISMS OF DEVELOPMENT

Endoglin controls blood vessel diameter through endothelial cell shape changes in response to haemodynamic cues

(2017) Wade W. Sugden et al.   NATURE CELL BIOLOGY

Cell lineage of timed cohorts ofTbx6-expressing cells in wild-type andTbx6mutant embryos

(2017) Daniel Concepcion et al.   Biology Open

Circularity, Solidity, Axes of a Best Fit Ellipse, Aspect Ratio, and Roundness of the Foramen Ovale

(2016) Matthew J. Zdilla et al.   JOURNAL OF CRANIOFACIAL SURGERY

Neural tube morphogenesis in synthetic 3D microenvironments

(2016) Adrian Ranga et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cdx and T Brachyury Co-activate Growth Signaling in the Embryonic Axial Progenitor Niche

(2016) Shilu Amin et al.   Cell Reports

Tissue mechanics and adhesion during embryo development

(2015) Joseph H. Shawky et al.   DEVELOPMENTAL BIOLOGY

Cross-Scale Integrin Regulation Organizes ECM and Tissue Topology

(2015) Dörthe Jülich et al.   DEVELOPMENTAL CELL

Differentiation of pluripotent stem cells to muscle fiber to model Duchenne muscular dystrophy

(2015) Jérome Chal et al.   NATURE BIOTECHNOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Retinoic Acid Activity in Undifferentiated Neural Progenitors Is Sufficient to Fulfill Its Role in Restricting Fgf8 Expression for Somitogenesis

(2015) Thomas J. Cunningham et al.   PLoS One

Haematopoietic stem cell induction by somite-derived endothelial cells controlled by meox1

(2014) Phong Dang Nguyen et al.   NATURE

ETS transcription factor ETV2 directly converts human fibroblasts into functional endothelial cells

(2014) Rimpei Morita et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Somites Without a Clock

(2014) A. S. Dias et al.   SCIENCE

scikit-image: image processing in Python

(2014) Stéfan van der Walt et al.   PeerJ

A Mesodermal Factor, T, Specifies Mouse Germ Cell Fate by Directly Activating Germline Determinants

(2013) Shinya Aramaki et al.   DEVELOPMENTAL CELL

Regulation of mesenchymal-to-epithelial transition by PARAXIS during somitogenesis

(2013) Megan Rowton et al.   DEVELOPMENTAL DYNAMICS

Genome engineering using the CRISPR-Cas9 system

(2013) F Ann Ran et al.   Nature Protocols

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Wnt signaling in myogenesis

(2012) Julia von Maltzahn et al.   TRENDS IN CELL BIOLOGY

Primordial Germ Cells in Mice

(2012) M. Saitou et al.   Cold Spring Harbor Perspectives in Biology

Cooperative activity of noggin and gremlin 1 in axial skeleton development

(2011) D. A. Stafford et al.   DEVELOPMENT

Blood Vessel Tubulogenesis Requires Rasip1 Regulation of GTPase Signaling

(2011) Ke Xu et al.   DEVELOPMENTAL CELL

A Pax3/Dmrt2/Myf5 Regulatory Cascade Functions at the Onset of Myogenesis

(2010) Takahiko Sato et al.   PLoS Genetics

Pax3:Foxc2 Reciprocal Repression in the Somite Modulates Muscular versus Vascular Cell Fate Choice in Multipotent Progenitors

(2009) Mounia Lagha et al.   DEVELOPMENTAL CELL

Dynamic 3D Cell Rearrangements Guided by a Fibronectin Matrix Underlie Somitogenesis

(2009) Gabriel G. Martins et al.   PLoS One

Critical function of Prdm14 for the establishment of the germ cell lineage in mice

(2008) Masashi Yamaji et al.   NATURE GENETICS