Another layer of complexity in Staphylococcus aureus methionine biosynthesis control: unusual RNase III-driven T-box riboswitch cleavage determines met operon mRNA stability and decay

Unboxing the T‐box riboswitches—A glimpse into multivalent and multimodal RNA–RNA interactions

(2020) Jinwei Zhang   Wiley Interdisciplinary Reviews-RNA

A non‐coding RNA from the intercellular adhesin ( ica ) locus of Staphylococcus epidermidis controls polysaccharide intercellular adhesin ( PIA )‐mediated biofilm formation

(2019) Maike F. Lerch et al.   MOLECULAR MICROBIOLOGY

Discovery of Small-Molecule Antibiotics against a Unique tRNA-Mediated Regulation of Transcription in Gram-Positive Bacteria

(2019) Kyla M. Frohlich et al.   ChemMedChem

An evolving tale of two interacting RNAs-themes and variations of the T-box riboswitch mechanism

(2019) Krishna C. Suddala et al.   IUBMB LIFE

RsaC sRNA modulates the oxidative stress response of Staphylococcus aureus during manganese starvation

(2019) David Lalaouna et al.   NUCLEIC ACIDS RESEARCH

Structural basis for tRNA decoding and aminoacylation sensing by T-box riboregulators

(2019) Robert A. Battaglia et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

High-affinity recognition of specific tRNAs by an mRNA anticodon-binding groove

(2019) Krishna C. Suddala et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

New tRNA contacts facilitate ligand binding in aMycobacterium smegmatisT box riboswitch

(2018) Anna V. Sherwood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive reshaping of bacterial operons by programmed mRNA decay

(2018) Daniel Dar et al.   PLoS Genetics

Specific structural elements of the T-box riboswitch drive the two-step binding of the tRNA ligand

(2018) Jiacheng Zhang et al.   eLife

Revisiting the methionine salvage pathway and its paralogues

(2018) Agnieszka Sekowska et al.   Microbial Biotechnology

Codon optimality, bias and usage in translation and mRNA decay

(2017) Gavin Hanson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Direct modulation of T-box riboswitch-controlled transcription by protein synthesis inhibitors

(2017) Vassiliki Stamatopoulou et al.   NUCLEIC ACIDS RESEARCH

Downstream element determines RNase Y cleavage of the saePQRS operon in Staphylococcus aureus

(2017) Gabriella Marincola et al.   NUCLEIC ACIDS RESEARCH

Codon influence on protein expression in E. coli correlates with mRNA levels

(2016) Grégory Boël et al.   NATURE

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

AglyST-box riboswitch with species-specific structural features responding to both proteinogenic and nonproteinogenic tRNAGlyisoacceptors

(2015) Maria Apostolidi et al.   RNA

Decay-Initiating Endoribonucleolytic Cleavage by RNase Y Is Kept under Tight Control via Sequence Preference and Sub-cellular Localisation

(2015) Vanessa Khemici et al.   PLoS Genetics

Structure and mechanism of the T-box riboswitches

(2015) Jinwei Zhang et al.   Wiley Interdisciplinary Reviews-RNA

Metabolic costs of amino acid and protein production inEscherichia coli

(2013) Christoph Kaleta et al.   Biotechnology Journal

Intersection of the stringent response and the CodY regulon in low GC Gram-positive bacteria

(2013) Tobias Geiger et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA

(2013) Jinwei Zhang et al.   NATURE

A universal RNA structural motif docking the elbow of tRNA in the ribosome, RNAse P and T-box leaders

(2013) Jean Lehmann et al.   NUCLEIC ACIDS RESEARCH

T box RNA decodes both the information content and geometry of tRNA to affect gene expression

(2013) J. C. Grigg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence, structure, and stacking

(2013) Jason C Grigg et al.   RNA Biology

Structural Determinants for Geometry and Information Decoding of tRNA by T Box Leader RNA

(2013) Jason C. Grigg et al.   STRUCTURE

Methionine Biosynthesis in Staphylococcus aureus Is Tightly Controlled by a Hierarchical Network Involving an Initiator tRNA-Specific T-box Riboswitch

(2013) Sonja M. K. Schoenfelder et al.   PLoS Pathogens

New Range of Vectors with a Stringent 5-Fluoroorotic Acid-Based Counterselection System for Generating Mutants by Allelic Replacement in Staphylococcus aureus

(2012) Peter Redder et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Life and Death of Proteins: A Case Study of Glucose-starvedStaphylococcus aureus

(2012) Stephan Michalik et al.   MOLECULAR & CELLULAR PROTEOMICS

RNase Y ofStaphylococcus aureusand its role in the activation of virulence genes

(2012) Gabriella Marincola et al.   MOLECULAR MICROBIOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Loop-loop interactions involved in antisense regulation are processed by the endoribonuclease III inStaphylococcus aureus

(2012) Cédric Romilly et al.   RNA Biology

The CshA DEAD-box RNA helicase is important for quorum sensing control inStaphylococcus aureus

(2012) Stella Oun et al.   RNA Biology

Transforming the Untransformable: Application of Direct Transformation To Manipulate Genetically Staphylococcus aureus and Staphylococcus epidermidis

(2012) I. R. Monk et al.   mBio

Global Regulatory Functions of the Staphylococcus aureus Endoribonuclease III in Gene Expression

(2012) Efthimia Lioliou et al.   PLoS Genetics

The Stringent Response of Staphylococcus aureus and Its Impact on Survival after Phagocytosis through the Induction of Intracellular PSMs Expression

(2012) Tobias Geiger et al.   PLoS Pathogens

Riboswitches: Discovery of Drugs That Target Bacterial Gene-Regulatory RNAs

(2011) Katherine E. Deigan et al.   ACCOUNTS OF CHEMICAL RESEARCH

Whole-Genome Sequencing of Staphylococcus aureus Strain RN4220, a Key Laboratory Strain Used in Virulence Research, Identifies Mutations That Affect Not Only Virulence Factors but Also the Fitness of the Strain

(2011) D. Nair et al.   JOURNAL OF BACTERIOLOGY

Synthesis and Stereospecificity of 4,5-Disubstituted Oxazolidinone Ligands Binding to T-box Riboswitch RNA

(2011) Crina M. Orac et al.   JOURNAL OF MEDICINAL CHEMISTRY

Solution Structure of the K-Turn and Specifier Loop Domains from the Bacillus subtilis tyrS T-Box Leader RNA

(2011) Jiachen Wang et al.   JOURNAL OF MOLECULAR BIOLOGY

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Arginine catabolic mobile element encoded speG abrogates the unique hypersensitivity of Staphylococcus aureus to exogenous polyamines

(2011) Gauri S. Joshi et al.   MOLECULAR MICROBIOLOGY

Repair of Global Regulators in Staphylococcus aureus 8325 and Comparative Analysis with Other Clinical Isolates

(2010) S. Herbert et al.   INFECTION AND IMMUNITY

NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA

(2010) Jiachen Wang et al.   NUCLEIC ACIDS RESEARCH

RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis

(2009) Karen Shahbabian et al.   EMBO JOURNAL

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

RNase P cleaves the adenine riboswitch and stabilizes pbuE mRNA in Bacillus subtilis

(2008) E. Seif et al.   RNA

Comparative genomic analysis of T-box regulatory systems in bacteria

(2008) A. G. Vitreschak et al.   RNA