Spaceflight induces novel regulatory responses in Arabidopsis seedling as revealed by combined proteomic and transcriptomic analyses

SHOU4 Proteins Regulate Trafficking of Cellulose Synthase Complexes to the Plasma Membrane

(2018) Joanna K. Polko et al.   CURRENT BIOLOGY

The SAUR gene family: the plant’s toolbox for adaptation of growth and development

(2018) Niek Stortenbeker et al.   JOURNAL OF EXPERIMENTAL BOTANY

Auxin Signaling

(2017) Ottoline Leyser   PLANT PHYSIOLOGY

SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations

(2016) Cornelia M. Hooper et al.   NUCLEIC ACIDS RESEARCH

Reactive oxygen species, abiotic stress and stress combination

(2016) Feroza K. Choudhury et al.   PLANT JOURNAL

Capping Protein Modulates Actin Remodeling in Response to Reactive Oxygen Species during Plant Innate Immunity

(2016) Jiejie Li et al.   PLANT PHYSIOLOGY

Redox- and Reactive Oxygen Species-Dependent Signaling into and out of the Photosynthesizing Chloroplast

(2016) Karl-Josef Dietz et al.   PLANT PHYSIOLOGY

ROS, Calcium, and Electric Signals: Key Mediators of Rapid Systemic Signaling in Plants

(2016) Simon Gilroy et al.   PLANT PHYSIOLOGY

The Emerging Role of Protein Phosphorylation as a Critical Regulatory Mechanism Controlling Cellulose Biosynthesis

(2016) Danielle M. Jones et al.   Frontiers in Plant Science

Transcriptional response of Arabidopsis seedlings during spaceflight reveals peroxidase and cell wall remodeling genes associated with root hair development

(2015) T. Kwon et al.   AMERICAN JOURNAL OF BOTANY

Spaceflight Induces Specific Alterations in the Proteomes of Arabidopsis

(2015) Robert J. Ferl et al.   ASTROBIOLOGY

Quantitative Proteomics Analysis of Camelina sativa Seeds Overexpressing the AGG3 Gene to Identify the Proteomic Basis of Increased Yield and Stress Tolerance

(2015) Sophie Alvarez et al.   JOURNAL OF PROTEOME RESEARCH

Capping protein integrates multiple MAMP signalling pathways to modulate actin dynamics during plant innate immunity

(2015) Jiejie Li et al.   Nature Communications

Integrative analyses reveal transcriptome-proteome correlation in biological pathways and secondary metabolism clusters in A. flavus in response to temperature

(2015) Youhuang Bai et al.   Scientific Reports

A Whole-Genome Microarray Study ofArabidopsis thalianaSemisolid Callus Cultures Exposed to Microgravity and Nonmicrogravity Related Spaceflight Conditions for 5 Days on Board of Shenzhou 8

(2015) Svenja Fengler et al.   Biomed Research International

Genome-wide expression analysis of reactive oxygen species gene network in Mizuna plants grown in long-term spaceflight

(2014) Manabu Sugimoto et al.   BMC PLANT BIOLOGY

Comparative Quantitative Proteomics Analysis of the ABA Response of Roots of Drought-Sensitive and Drought-Tolerant Wheat Varieties Identifies Proteomic Signatures of Drought Adaptability

(2014) Sophie Alvarez et al.   JOURNAL OF PROTEOME RESEARCH

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

(2014) Rob Patro et al.   NATURE BIOTECHNOLOGY

SAUR Inhibition of PP2C-D Phosphatases Activates Plasma Membrane H+-ATPases to Promote Cell Expansion in Arabidopsis

(2014) A. K. Spartz et al.   PLANT CELL

Differential protein expression profiling of Arabidopsis thaliana callus under microgravity on board the Chinese SZ-8 spacecraft

(2014) Yue Zhang et al.   PLANTA

A Peptide Hormone and Its Receptor Protein Kinase Regulate Plant Cell Expansion

(2014) M. Haruta et al.   SCIENCE

Organ-specific remodeling of the Arabidopsis transcriptome in response to spaceflight

(2013) Anna-Lisa Paul et al.   BMC PLANT BIOLOGY

α-Tubulin is Rapidly Phosphorylated in Response to Hyperosmotic Stress in Rice and Arabidopsis

(2013) Yoshinori Ban et al.   PLANT AND CELL PHYSIOLOGY

Cytosolic calcium, hydrogen peroxide and related gene expression and protein modulation inArabidopsis thalianacell cultures respond immediately to altered gravitation: parabolic flight data

(2013) N. Hausmann et al.   PLANT BIOLOGY

Transcriptome analyses of Arabidopsis thaliana seedlings grown in space: implications for gravity-responsive genes

(2013) Melanie J. Correll et al.   PLANTA

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Plant growth strategies are remodeled by spaceflight

(2012) Anna-Lisa Paul et al.   BMC PLANT BIOLOGY

High-pH reversed-phase chromatography with fraction concatenation for 2D proteomic analysis

(2012) Feng Yang et al.   Expert Review of Proteomics

Discovery and Analysis of Cofactor-dependent Phosphoglycerate Mutase Homologs as Novel Phosphoserine Phosphatases inHydrogenobacter thermophilus

(2012) Yoko Chiba et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana

(2012) Corinna Streitner et al.   NUCLEIC ACIDS RESEARCH

Capping Protein Modulates the Dynamic Behavior of Actin Filaments in Response to Phosphatidic Acid in Arabidopsis

(2012) J. Li et al.   PLANT CELL

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis RING Finger E3 Ligase RHA2b Acts Additively with RHA2a in Regulating Abscisic Acid Signaling and Drought Response

(2011) H. Li et al.   PLANT PHYSIOLOGY

Gene expression changes in Arabidopsis seedlings during short- to long-term exposure to 3-D clinorotation

(2011) Hyuncheol Soh et al.   PLANTA

Comparative Analysis of Proteome and Transcriptome Variation in Mouse

(2011) Anatole Ghazalpour et al.   PLoS Genetics

The Arabidopsis Botrytis Susceptible1 Interactor Defines a Subclass of RING E3 Ligases That Regulate Pathogen and Stress Responses

(2010) H. Luo et al.   PLANT PHYSIOLOGY

ATL9, a RING Zinc Finger Protein with E3 Ubiquitin Ligase Activity Implicated in Chitin- and NADPH Oxidase-Mediated Defense Responses

(2010) Marta Berrocal-Lobo et al.   PLoS One

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Estimating accuracy of RNA-Seq and microarrays with proteomics

(2009) Xing Fu et al.   BMC GENOMICS