BetaCavityWeb: a webserver for molecular voids and channels

BetaVoid: Molecular voids via beta-complexes and Voronoi diagrams

(2014) Jae-Kwan Kim et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Software tools for identification, visualization and analysis of protein tunnels and channels

(2012) Jan Brezovsky et al.   BIOTECHNOLOGY ADVANCES

QTF: Quasi-triangulation file format

(2012) Deok-Soo Kim et al.   COMPUTER-AIDED DESIGN

Anomalies in quasi-triangulations and beta-complexes of spherical atoms in molecules

(2012) Deok-Soo Kim et al.   COMPUTER-AIDED DESIGN

MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels

(2012) K. Berka et al.   NUCLEIC ACIDS RESEARCH

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures

(2012) Eva Chovancova et al.   PLoS Computational Biology

Voronoi-Based Extraction and Visualization of Molecular Paths

(2011) N. Lindow et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Quasi-worlds and quasi-operators on quasi-triangulations

(2010) Deok-Soo Kim et al.   COMPUTER-AIDED DESIGN

Three-dimensional beta-shapes and beta-complexes via quasi-triangulation

(2010) Deok-Soo Kim et al.   COMPUTER-AIDED DESIGN

RosettaHoles2: A volumetric packing measure for protein structure refinement and validation

(2010) William Sheffler et al.   PROTEIN SCIENCE

Structure of the Human BK Channel Ca2+-Activation Apparatus at 3.0 A Resolution

(2010) P. Yuan et al.   SCIENCE

PoreWalker: A Novel Tool for the Identification and Characterization of Channels in Transmembrane Proteins from Their Three-Dimensional Structure

(2009) Marialuisa Pellegrini-Calace et al.   PLoS Computational Biology

How membrane proteins sense voltage

(2008) Francisco Bezanilla   NATURE REVIEWS MOLECULAR CELL BIOLOGY

MolAxis: a server for identification of channels in macromolecules

(2008) Eitan Yaffe et al.   NUCLEIC ACIDS RESEARCH